FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466109
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65181.3983853562149626No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30640.6573569701507587No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27950.5996451473796902No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT15150.3250312695099215No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14920.32009680139194907No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14490.31087149143226156No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13080.2806210564481698No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11830.25380329493745024No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC9760.2093930818756986No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9690.20789128723109832No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9170.19673509844263895No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8320.17849902061534964No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8100.173779094589463No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7830.16798645810314755No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7720.16562649509020422No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7600.16305198998517514No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7490.1606920269722318No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6910.14824858563125792No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6850.1469613330787434No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6450.1383796493953131No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6120.13129976035648314No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5620.12057265575219529No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5560.11928540319968077No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5550.119070861107595No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5510.11821269273925197No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC5170.11091826160833625No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5140.11027463533207899No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT4670.1001911570040484No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)