FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484280
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17490.3611547038903114No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC14060.2903279094738581No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13130.2711241430577352No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11670.24097629470554224No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11060.22838027587346166No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10530.2174361939373916No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8510.17572478731312463No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8210.16953002395308497No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7490.15466259188898984No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6520.13463285702486166No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6390.13194845956884446No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6220.128438093664822No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5660.11687453539274799No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5030.10386553233666473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)