FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484280
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28800.594697282563806No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24300.5017758321632114No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14170.29259932270587263No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC14140.2919798463698687No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12620.2605930453456678No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12370.25543074254563475No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12170.2513009003056083No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11670.24097629470554224No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9030.18646237713719335No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8990.18563640868918807No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7790.1608573552490295No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6990.14433798628892375No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6290.12988353844883127No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6070.12534071198480218No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5880.12141736185677707No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5820.12017840918476913No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5740.11852647228875857No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5370.11088626414470967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)