FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441801
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58971.334763841639109No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22570.5108634883126113No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12700.2874597386606187No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC12530.28361185239508285No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11760.26618319107471466No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11720.2652778060710591No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10560.23902164096504985No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9860.22317740340107878No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8130.18401950199297873No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7770.1758710369600793No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6570.14870948685041455No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6200.14033467556660126No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5740.1299227480245631No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5380.12177428299166367No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5310.12018985923526655No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5290.1197371667334388No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5180.11724735797338622No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4860.11000427794414228No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4600.10411927542038157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)