FastQCFastQC Report
Wed 31 May 2023
EGAF00007927733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444832
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15520.34889576289475577No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC13270.2983148694338537No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12000.2697647651248111No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10760.24188907272858065No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10750.24166426875764335No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9150.2056956334076685No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8450.18995935544205453No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7240.16275807495863606No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6570.1476962089058341No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6180.13892885403927774No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5590.12566541975397452No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5420.1218437522480397No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5400.12139414430616502No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5170.11622365297460613No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4720.10610747428242571No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)