FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444832
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64381.4472879648946118No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21550.4844525573699734No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13350.30011330120135243No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12950.2911211423638587No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12370.27808251204949286No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11610.2609974102582548No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11100.24953240774045032No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10270.2308736781526509No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8970.20164916193079635No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7460.1677037623192576No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6600.14837062081864613No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6300.14162650169052585No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5880.13218473491115745No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5760.12948708725990934No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5690.12791345946334795No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5660.12723904755053592No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5360.12049492842241565No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5050.11352600532335802No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5020.112851593410546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)