FastQCFastQC Report
Sun 21 May 2023
EGAF00007927735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523012
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23280.445114070040458No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20950.4005644229960307No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18050.34511636444288085No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17660.3376595565684917No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16370.3129947305224354No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG13960.2669154818627489No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12610.2411034546052481No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12000.22944024228889587No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA11430.2185418307801733No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10940.20917302088671008No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9970.19062660130169098No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9550.18259619282157963No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9450.1806841908025055No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9130.17456578434146824No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8430.16118177020794935No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8180.15640176516026402No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8070.15429856293928249No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7950.1520041605163935No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7950.1520041605163935No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7720.147606555872523No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA7670.14665055486298592No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7430.14206175001720803No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7170.13709054476761529No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7010.13403134153709667No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6920.13231053971992995No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6920.13231053971992995No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6680.12772173487415203No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6520.1246625316436334No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6400.12236812922074446No Hit
CACGTTCTGAATCGGGCGGGATTGGGTCTGACGACCTTCGATGT6390.12217692901883705No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6160.11777932437496653No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6110.11682332336542947No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6070.11605852255779982No Hit
GTAAGACAGCACCTGGCCCGGATAGATCAGGTTGGCGTTGGAGA6000.11472012114444793No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5540.10592491185670694No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5390.10305690882809572No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5390.10305690882809572No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5360.10248330822237349No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5340.10210090781855866No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)