FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523012
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70641.350638226273967No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44360.848164095661285No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23270.4449228698385505No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19390.37073719149847423No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG18670.3569707769611405No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18040.3449251642409734No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16800.3212163392044542No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14680.2806818964000826No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG14140.2703570854970823No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12400.2370882503651924No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA11880.2271458398660069No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10220.19540660634937632No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10110.19330340412839475No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9850.188332198878802No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9700.18546419585019083No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8500.16252017162130122No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8460.16175537081367158No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8410.1607993698041345No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8020.1533425619297454No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8000.1529601615259306No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7760.14837135668015264No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7760.14837135668015264No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7510.1435913516324673No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7240.13842894618096716No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7070.13517854274854116No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7070.13517854274854116No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6680.12772173487415203No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6490.12408893103791117No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6420.12275052962455928No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6310.12064732740357774No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6310.12064732740357774No Hit
ATGAACGCACCGGATGATCTGGTCCTGTTCG6270.1198825265959481No Hit
AAAATTTCCGGCAGCCAGGCATCCTCCCACA6220.11892652558641102No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6200.1185441251825962No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5980.11433772074063309No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5850.11185211811583673No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5410.10343930923191055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)