FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences571670
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48990.8569629331607397No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34410.601920688509105No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26820.46915178337152547No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC21450.37521647104098516No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19970.34932740916962585No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG19410.3395315479210034No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19170.33533332167159374No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16500.28862805464691166No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG15690.2744590410551542No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13130.22967796106145152No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA12110.21183549950146066No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12080.2113107212202844No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11820.20676264278342402No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA11170.19539244669127295No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10920.1910192943481379No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9530.16670456732030717No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9390.16425560200815156No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9330.16320604544579914No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA9040.15813318872776252No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8750.1530603320097259No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8570.14991166232266867No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8260.14448895341718124No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8040.14064057935522242No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8010.14011580107404623No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7810.1366172791995382No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7730.135217870449735No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7680.13434323998110798No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7600.13294383123130477No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7360.12874560498189513No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7170.12542200920111254No Hit
AAAATTTCCGGCAGCCAGGCATCCTCCCACA7140.12489723091993632No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6990.12227333951405531No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6960.12174856123287911No Hit
ATGAACGCACCGGATGATCTGGTCCTGTTCG6850.11982437420189969No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6790.11877481763954728No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6510.11387688701523606No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6090.10652999107876923No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6070.10618013889131843No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6020.1053055084226914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)