FastQCFastQC Report
Wed 31 May 2023
EGAF00007927742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484667
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68771.4189123666352361No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7860.16217320345721908No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7500.1547454231462014No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7240.14938091514379975No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6770.13968353529330446No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6300.12998615544280917No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5940.12255837513179152No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5240.10811546897147939No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5140.10605219666286338No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4970.10254463373821615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)