FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503275
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30740.6107992648154588No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22580.44866126869008No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14370.28552977994138395No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11350.22552282549302075No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10750.21360091401321346No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10240.20346728925537727No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8270.16432367989667676No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7970.15836272415677313No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7290.14485122447965823No Hit
ATTGTCGCACCGTCCGTTGAAGAAATCGTGG6890.13690328349312006No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6110.12140479856937061No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5350.1063037106949481No Hit
ACCGGCCCGACTCTGACTACCCACTCTTGCT5240.1041180269236501No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)