FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464733
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12340.26552880901506887No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9590.20635504687637846No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8300.17859717300041097No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7320.15750979594735043No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7180.1544973135111989No Hit
AACAGTCGGAACAACGATTTCCTCCACGCTTGGCGCAACGGATT6580.141586674499121No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6280.13513135499308204No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5640.1213600067135323No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5640.1213600067135323No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4940.10629759453277474No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4910.10565206258217083No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4870.10479135331469898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)