FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464733
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64711.3924124174526018No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19870.4275573286166465No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12540.26983235535242817No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11720.25218781536925505No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10060.21646838076917282No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9110.19602653566671616No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7680.16525617935459716No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7460.16052227838350192No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6980.15019376717383962No Hit
ATTGTCGCACCGTCCGTTGAAGAAATCGTGG6450.13878936937983746No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5220.11232255940507777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)