FastQCFastQC Report
Wed 31 May 2023
EGAF00007927747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468905
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13120.27980081253132294No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9660.2060118787387637No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9210.19641505208944243No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7550.16101342489416834No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7360.15696143142001046No Hit
AACAGTCGGAACAACGATTTCCTCCACGCTTGGCGCAACGGATT7110.1516298610592764No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6400.1364882012347917No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5740.1224128554824538No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5620.11985370170930147No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5280.11260276601870314No Hit
GAACGGACGAGTCGTCTTGCGCGGTTTTTTACGCGGAGACAGTT5090.10855077254454527No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5070.10812424691568655No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4970.10599161877139292No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4760.10151309966837632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)