FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468905
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66311.4141457224810996No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20870.4450794937140785No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13270.2829997547477634No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12820.27340292809844213No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10080.21496891694479692No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9480.20217314807903522No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7920.1689041490280547No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7570.16143995052302704No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7030.1499237585438415No Hit
ATTGTCGCACCGTCCGTTGAAGAAATCGTGG6890.14693807914183044No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5560.1185741248227253No Hit
ACCGGCCCGACTCTGACTACCCACTCTTGCT5150.10983034943112145No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5140.10961708661669207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)