FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486981
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12880.2644867048201059No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10840.222595953435555No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9840.20206127138430452No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9490.19487413266636688No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7990.16407210958949117No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6590.13532355471774055No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6260.12854710964082788No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5670.1164316472305901No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)