FastQCFastQC Report
Wed 31 May 2023
EGAF00007927751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448268
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12180.27171245772618163No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10690.2384734132260166No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8910.19876502449427574No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8140.18158780015526427No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7550.16842603085654118No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5660.12626375293351297No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5620.12537142959122669No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5470.12202521705765301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)