FastQCFastQC Report
Wed 31 May 2023
EGAF00007927754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463342
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63431.3689671991746917No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8390.18107574966223652No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7390.15949341954754803No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5760.12431422146060578No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5740.123882574858312No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5690.12280345835257757No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4670.1007894816355953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)