FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927756

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927756
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510682
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31980.6262214058846797No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10290.20149525536439505No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9260.18132614817048576No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6530.12786822327789113No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5880.11514014592251146No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5880.11514014592251146No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5620.1100489149803596No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5570.10906983210686885No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5510.10789493265867996No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5150.1008455359695466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)