FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477288
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG31170.6530648162115955No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG24100.5049362229932451No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG23150.48503209802048236No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG21040.4408239888704514No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG19850.4158914533782538No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG18630.39033036657112685No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG16400.34360805216137846No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG14320.3000284943262768No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13800.2891336048675014No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG12440.2606392785907042No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG11610.24324935887765878No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG11540.2417827391428236No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG11040.2313068838940011No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10600.2220881312750373No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG9990.20930758787147383No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG9950.20846951945156802No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT9760.20448869445701548No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG9710.20344110893213324No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9580.20071738656743937No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG8830.1850036036942056No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT8220.17222306029064213No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8110.16991837213590116No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT7730.16195672214679607No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7410.15525217478754966No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC7250.15189990110792645No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7190.15064279847806775No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6760.1416335629640804No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6650.13932887480933945No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6210.13011012219037563No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6110.12801495114061112No Hit
CAGGAAGTTTTCTACAGAGGATTCAGTGCGAGAGTGGTAGTTTT5980.12529122877591728No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5510.11544392484202412No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)