FastQCFastQC Report
Wed 31 May 2023
EGAF00007927758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477288
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG33920.7106820200801193No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29020.6080186386416586No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG26270.5504014347731349No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC25250.5290306900655369No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG24240.5078694624629154No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG21780.4563282546387087No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC21120.442500125710263No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG20720.43411944151120496No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG18440.3863495415765743No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC14150.29646670354167715No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14090.29520960091181847No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG13330.27928630093360823No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG12670.26545817200516253No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG11850.24827776939709356No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG11790.2470206667672349No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11570.24241129045775295No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11430.23947805098808267No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG11120.2329830207338127No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG10690.22397378521982533No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG10540.22083102864517862No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG10200.21370744707597927No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10190.21349792997100284No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9850.20637434840180352No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9170.19212718526340491No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8620.18060374448970012No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8620.18060374448970012No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC7990.16740416687618379No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC7650.16028058530698447No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG7480.1567187945223848No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7380.1546236234726203No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6900.1445668024337507No Hit
GAAGCCGTGAACCGTGCGGTGGCTCGTGTCG6560.13744322086455138No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6000.12571026298587015No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5670.1187961985216473No Hit
GGTCCAGCTCACTCTAAAGAAGTGCCGGCGC5600.11732957878681216No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5430.1137677880022125No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4950.10371096696334288No Hit
TCCAAAGAAATCCCGGCCCTGACCGCAGTGG4900.10266338143846063No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4900.10266338143846063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)