FastQCFastQC Report
Wed 31 May 2023
EGAF00007927759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480959
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG31610.6572285787354016No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG24230.5037851459271996No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG23880.49650801835499486No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG21060.4378751619160885No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG19180.3987865909568175No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG18880.392549053037785No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG16940.35221297449470745No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG14950.31083730629845785No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14880.3093818807840169No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG12480.25948157743175615No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG12170.2530361215820891No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11400.2370264409232388No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG11340.23577893333943226No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG10890.22642262646088337No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG10260.2133237968309149No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG10130.21062086373266745No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT9630.20022496720094643No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG9410.1956507727269892No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG9390.19523493686572035No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9160.1904528244611287No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT8570.17818566655369794No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8290.17236396449593416No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7240.15053258177932005No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT7210.1499088279874168No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7190.14949299212614797No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC7050.14658214109726608No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA6780.14096835697013677No Hit
CAGGAAGTTTTCTACAGAGGATTCAGTGCGAGAGTGGTAGTTTT6430.13369122939793204No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6420.13348331146729764No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6060.1259982659644585No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5860.12183990735177011No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5620.11684987701654403No Hit
CGGCTGTTCGTTGTCGACTTCGATAATTGCAACGCAAGCGCCGC5350.11123609288941469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)