FastQCFastQC Report
Wed 31 May 2023
EGAF00007927760

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927760
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480959
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG34810.7237623165384159No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30040.6245854636257976No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG27360.5688634582157731No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC26320.5472399934297935No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG25050.520834416239222No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC21830.4538848425749388No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG21800.45326108878303556No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG19220.3996182626793552No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG19150.3981628371649143No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15050.3129164856048021No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC14240.29607513322341406No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG13300.27653084774377856No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG12670.2634320181138101No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12420.2582340698479496No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG12220.25407571123526124No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG11420.23744227678450763No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11390.23681852299260436No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG11190.23266016437991596No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG10990.22850180576722756No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG10800.2245513650851736No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG10500.21831382716614098No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10070.2093733561488609No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9620.20001704927031205No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9000.18712613757097799No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8780.18255194309702075No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7980.16591850864626714No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7870.16363141140928852No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC7800.16217598589484758No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC7340.15261176108566427No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7250.15074049970995448No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG7040.14637422316663165No Hit
GAAGCCGTGAACCGTGCGGTGGCTCGTGTCG6790.14117627490077117No Hit
GGTCCAGCTCACTCTAAAGAAGTGCCGGCGC6470.13452290112046972No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5910.12287949700494222No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5900.1226715790743078No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5140.10686981634609187No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5070.10541439083165093No Hit
TCCAAAGAAATCCCGGCCCTGACCGCAGTGG4890.10167186808023136No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4890.10167186808023136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)