FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444196
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9700.2183720699871228No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8930.20103737989536152No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7830.1762735369071311No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7440.16749362893857667No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5840.13147349368296876No Hit
TTCAACTTTCGGGCTCGGCGGCAGGATTGCACCGGTCTGTTTTT5420.12201820817837172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)