FastQCFastQC Report
Wed 8 May 2024
EGAF00007927762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444196
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26390.5941071058721825No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16900.3804626786373583No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10130.2280524813370674No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9010.20283838665814188No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8540.1922574719268071No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7700.17334690091761296No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6960.15668758836189428No Hit
ACTCTGGCTACCCCAGCCGTGCGTCGTCTGG5330.11999207557024376No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4530.10198200794243983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)