FastQCFastQC Report
Wed 31 May 2023
EGAF00007927763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446921
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10030.22442445085373028No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9790.21905437426301294No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7480.16736738707735818No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7190.16087854453024136No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5730.12821057860337734No Hit
TTCAACTTTCGGGCTCGGCGGCAGGATTGCACCGGTCTGTTTTT5190.11612790627426324No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4510.10091268926723067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)