FastQCFastQC Report
Wed 31 May 2023
EGAF00007927764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446921
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27110.6065949015597835No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16630.3721015570984581No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10120.22643822957524934No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9900.22151565936709172No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8090.18101633174543152No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8070.18056882536287175No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7630.17072368494655657No Hit
ACTCTGGCTACCCCAGCCGTGCGTCGTCTGG5060.11321911478762467No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4650.10404523394514915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)