FastQCFastQC Report
Sun 21 May 2023
EGAF00007927766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491705
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31120.6328998078115943No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16840.3424817726075594No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14990.30485758737454366No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11740.2387610457489755No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11640.23672730600665035No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11240.22859234703734962No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10040.20418747012944755No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6320.12853235171495103No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG6200.1260918640241608No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6010.122227758513743No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5170.10514434467821152No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5110.10392410083281643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)