FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457902
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66031.4420116094710222No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17080.37300557761267694No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13850.30246646662386273No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10450.22821477084616357No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10320.2253757354193692No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10210.2229734746736201No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8810.19239924700044989No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6330.13823918655083403No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5760.1257911081410433No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG5610.12251529803320363No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4810.10504431079139205No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4630.10111333866198444No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)