FastQCFastQC Report
Sun 21 May 2023
EGAF00007927775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527760
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9790.18550098529634682No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9500.18000606336213432No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9330.17678490222828558No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8250.15632105502501137No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6330.11994088221919054No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6190.11728816128543278No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6080.11520388055176595No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5900.11179323935122025No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5430.10288767621646203No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5410.10250871608306807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)