FastQCFastQC Report
Sun 21 May 2023
EGAF00007927776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527760
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50230.951758375018948No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20430.3871077762619372No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12330.2336289222373806No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10080.19099590723055934No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9670.18322722449598303No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6580.12467788388661513No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6450.12221464301955434No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6400.12126724268606943No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5830.11046687888434135No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5510.10440351675003791No Hit
ATGGAATCTTCTGCCAAACGTAAAATGGATC5470.10364559648324996No Hit
GAAGACGGTAAGGTTATGGTCCTGTGCAACC5340.10118235561618917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)