FastQCFastQC Report
Sun 21 May 2023
EGAF00007927777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498164
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8800.17664865385696277No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7580.15215872684497475No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7500.15055282999172964No Hit
GGAATGACGCAGGATCGCGCAGCCTACGGTGTCGGTGCGATCCT6150.12345332059321829No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5590.1122120426205025No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5480.11000393444729045No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5070.10177371307440923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)