FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498164
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12110.24309263615997942No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11700.2348624147870982No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9410.18889361736295676No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9050.18166708152335376No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7500.15055282999172964No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7300.14653808785861686No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6320.12686585140636417No Hit
ATCAAAAAGCTGATTCGCGCCTGGTTCAAAG6180.12405553191318522No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5570.11181056840719121No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5350.10739435206076713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)