FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500697
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49870.9960115598855197No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34690.6928341891403383No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20420.4078314829128195No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18520.3698843811726453No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16290.32534646702496717No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14090.2814077176416076No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13220.26403193947636994No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10530.21030683227580751No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9970.19912242334186145No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9940.1985232585775429No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8160.16297281589464288No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7800.1557828387228204No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6920.13820733896947657No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6740.1346123503835653No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6540.1306179186214417No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6520.13021847544522935No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6170.12322821986151306No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6130.12242933350908831No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5950.11883434492317708No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5810.11603824268969058No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5240.10465411216763831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)