FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497984
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49360.9911965043053592No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33230.6672905153579232No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17180.34499100372702735No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14400.2891659169772523No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11120.2233003469991004No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10110.2030185708777792No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9630.19337970697853746No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9620.19317889731396992No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8780.17631088549029686No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6390.1283173756586557No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6280.1261084693484128No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6150.12349794370903483No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5360.10763398020819945No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5020.10080645161290322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)