FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504826
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48430.9593404460150625No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35350.700241271249896No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18730.3710189253326889No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15360.3042632511003791No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10540.20878480902330704No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10340.20482304794127085No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9000.1782792486916284No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8940.17709072036701756No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8800.17431748760959223No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6630.13133237986949958No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6310.12499356213824168No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6110.1210318010562055No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5350.10597710894446799No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5170.10241152397063542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)