FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447915
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45151.0080037507116306No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15430.3444850027348939No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11050.24669859236685532No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10510.2346427335543574No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7570.16900528001964657No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7390.1649866604154806No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6430.14355402252659544No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6010.13417724345020818No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5800.12948885391201456No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5660.12636326088655214No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5640.12591674759720037No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5310.11854927832289609No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5310.11854927832289609No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5240.11698648181016488No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5030.11229809227197125No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4990.1114050656932677No Hit
GAACGTCCATCCGCCGGTGAAGCGCAGGCTC4890.10917249924650883No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4850.10827947266780528No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4820.10760970273377762No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4800.10716318944442585No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4790.10693993279974996No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4660.10403759641896343No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4610.102921313195584No Hit

[OK]Adapter Content

Adapter graph