FastQCFastQC Report
Wed 8 May 2024
EGAF00007927805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473567
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16030.3384948697861126No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9310.19659309031245842No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8050.16998650666114826No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7820.1651297493279726No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6480.13683385877816656No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5910.12479754712638338No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5860.12374173031482345No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5780.12205242341632758No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5580.11782915617008786No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5360.11318356219922418No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5290.11170541866304029No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5130.10832680486604852No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5120.10811564150373654No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5090.10748215141680058No Hit
GACCGGGAACAGGGTATGGTCCGGACGTGCGGTGGCGTGTGGGT4890.10325888417056087No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4860.10262539408362492No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4760.10051376046050506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)