FastQCFastQC Report
Wed 31 May 2023
EGAF00007927806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473567
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16680.3522204883363917No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11850.2502285843397027No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11530.24347135674571918No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11470.24220437657184726No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8550.18054467477674754No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8300.1752655907189479No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7430.15689437819780516No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6450.1362003686912306No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6400.13514455187967067No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT6050.1277538341987512No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5910.12479754712638338No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5870.12395289367713544No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5690.1201519531555197No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5560.11740682944546389No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5550.1171956660831519No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5380.11360588892384815No Hit
GAACGTCCATCCGCCGGTGAAGCGCAGGCTC5360.11318356219922418No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5270.11128309193841632No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5260.11107192857610433No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5140.10853796822836051No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5080.10727098805448859No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5030.10621517124292867No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4920.10389237425749683No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4920.10389237425749683No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4790.10114725054744102No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4760.10051376046050506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)