FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454712
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15790.34725276658632276No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8570.18847094424602825No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7580.16669892151515683No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7270.15988141944791429No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6810.14976512605781242No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG6010.13217157233589613No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5580.12271503721036613No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5580.12271503721036613No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5300.11655729340769541No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5050.11105930786959657No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5020.11039954960502472No Hit
GACCGGGAACAGGGTATGGTCCGGACGTGCGGTGGCGTGTGGGT5020.11039954960502472No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4810.1057812417530217No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4790.10534140290997379No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4650.10226253100863844No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4570.1005031756364468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)