FastQCFastQC Report
Sun 21 May 2023
EGAF00007927810

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927810
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517788
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24620.4754841749905367No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12700.2452741276352484No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11840.22866501348042054No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11680.22557494573068512No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11030.21302154549738503No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10820.20896583157585727No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9440.18231399723438937No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9330.18018957565644628No Hit
CTGCCGGTTACCGTCACCATCGCCCCGATGT7050.13615611022271662No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6950.13422481787913199No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6200.11974012530224726No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6190.11954699606788878No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6050.1168431867868703No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6050.1168431867868703No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6040.11665005755251184No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6020.1162637990837949No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5280.10197223574126862No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5200.10042720186640092No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5180.100040943397684No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)