FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927812

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927812
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463644
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22660.4887370482525386No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13990.30174012820181No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13740.2963480601495976No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11600.2501919576226588No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11480.24760376495759676No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11470.2473880822355083No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8390.1809578038322506No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7000.15097790546194925No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5350.11539025631734692No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4940.10654726471171848No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4760.1026649757141255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)