FastQCFastQC Report
Wed 31 May 2023
EGAF00007927814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467250
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21890.46848582129481003No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14410.3084002140181915No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13710.29341894060995183No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12830.2745853397538791No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11450.24505082932049221No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11020.23584804708400214No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8600.18405564472980204No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7500.16051364365971107No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5110.1093632958801498No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4840.1035848047084002No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4740.1014446227929374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)