FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490542
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51311.0459858686921812No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33900.6910723240823415No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27160.5536732838370618No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26050.531045251986578No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25380.517386890419169No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14690.2994646737690147No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13120.267459259349862No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12800.2609358627803532No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12450.2538008977824529No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11700.23851168707266657No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11080.2258726062192432No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9810.19998287608400503No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9650.19672117779925063No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9200.18754765137337884No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9000.1834705285174358No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8290.1689967423788381No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8100.16512347566569224No Hit
GACCTGTTCATCAAACGTCTGGATCGCTGCC7910.16125020895254638No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7600.1549306685258347No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7460.15207668252667458No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6780.13821446481646832No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6580.1341373419605253No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6270.1278178015338136No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5680.11579028910878172No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5350.10906303639647574No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4930.10050107839899539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)