FastQCFastQC Report
Wed 31 May 2023
EGAF00007927820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517915
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36970.7138236969386869No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28750.5551103945628143No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27380.528658177500169No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25750.497185831651912No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16970.32765994419933775No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13440.2595020418408426No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13410.2589227962117336No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13160.25409574930249174No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13150.25390266742612205No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12890.2488825386405105No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11930.23034667850902174No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10210.19713659577343773No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10070.19443344950426228No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9590.1851655194385179No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9400.18149696378749408No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9280.179179981271058No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9050.17473909811455546No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8000.15446550109573964No Hit
GACCTGTTCATCAAACGTCTGGATCGCTGCC7650.14770763542280102No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7590.14654914416458298No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7430.1434598341426682No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6890.13303341281870576No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6860.13245416718959674No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6370.12299315524748271No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6080.11739378083276213No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5590.10793276889064808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)