FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514480
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG17730.344619810293889No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14480.28144923029077906No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14350.27892240709065463No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12950.25171046493546884No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11860.23052402425750274No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG10710.20817135748717153No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10100.19631472554812626No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9360.18193127040895662No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8630.16774218628518117No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG8620.167547815269787No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8500.16521536308505674No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7960.1547193282537708No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7910.15374747317679988No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7840.15238687606904058No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7700.149665681853522No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7200.1399471310838128No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6490.1261467889908257No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6320.12284248172912457No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5970.11603949619032809No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5770.1121520758824444No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5730.11137459182086767No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5680.11040273674389675No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC5370.10437723526667703No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5340.10379412222049449No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5220.10146167003576426No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5170.10048981495879333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)