FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514480
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18530.3601694915254237No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17960.3490903436479552No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16960.32965324210853675No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15830.30768931736899396No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12810.24898927071995025No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12650.2458793344736433No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12470.24238065619654794No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11500.22352666770331206No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG11150.21672368216451562No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10190.1980640646866739No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9270.18018193127040893No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9180.1784325921318613No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8910.17318457471621831No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8870.17240709065464158No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8550.16618721816202767No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8480.16482662105426837No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8010.15569118333074172No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7340.14266832529933135No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7040.13683719483750584No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6970.13547659772974655No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6370.12381433680609547No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG6340.12323122375991291No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6250.12148188462136526No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6210.12070440055978852No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6130.11914943243663506No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6050.11759446431348157No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC5840.1135126729902037No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5550.10787591354377236No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5490.10670968745140726No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5170.10048981495879333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)