FastQCFastQC Report
Wed 31 May 2023
EGAF00007927826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515746
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18180.3524990983933952No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13260.257103302788582No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12900.2501231226223761No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12230.23713223175749304No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12110.2348055050354244No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10250.19874124084336087No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9190.17818848813175478No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7920.1535639636565286No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6950.13475625598647398No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6510.12622492467222238No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5730.11110120097877636No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5620.10896836815021348No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5400.10470270249308769No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5310.10295765745153623No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)