FastQCFastQC Report
Wed 31 May 2023
EGAF00007927828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519412
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18360.35347662356664844No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13570.26125695979299673No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13320.25644382494050966No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13270.25548119797001223No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11750.226217338066891No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10290.1981086305283667No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9190.1769308371774237No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8090.15575304382648072No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7060.1359229282342341No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6290.121098472888574No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5800.1116647285776994No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5600.10781422069570976No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5290.10184593347862583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)