FastQCFastQC Report
Sun 21 May 2023
EGAF00007927834

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927834
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489638
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26750.5463219766439696No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17800.3635338760472022No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12440.254065248203775No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8770.17911191533336873No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7990.1631817791919745No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7150.14602624796278066No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7080.14459662036034784No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6640.13561038971648443No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6250.1276453216457873No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6070.12396913638238861No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5770.11784216094339083No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5470.11171518550439305No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5110.10436281497759568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)